intron

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intron
intron Genetics. (ˈɪntrɒn) [f. intr(agenic adj. s.v. intra- + -on1: see quot. 1978.] A segment of an RNA molecule which is excised during or soon after its transcription from DNA and takes no part in forming the eventual gene; a segment of a DNA molecule which codes for this. Cf. exon2.1978, etc. [s... Oxford English Dictionary
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Group III intron
Group III intron is a class of introns found in mRNA genes of chloroplasts in euglenid protists. Splicing is done with two transesterification reactions with a dVI bulged adenosine as initiating nucleophile; the intron is excised as a lariat. wikipedia.org
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Group II intron
Protein machinery is required for splicing in vivo, and long-range intron-intron and intron-exon interactions are important for splice site positioning See also Database for bacterial group II introns Intron Splice site Nuclear introns Group I intron Group III intron Twintron LtrA References Further wikipedia.org
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Small t intron
The small T intron is an intron, that is used in some plasmid vectors, in order to induce gene expression in mammalian cells. Function The function of this intron in the vectors is unknown, but it is theorized that it might be involved in splicing or translation efficiency. wikipedia.org
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What are limiting factors for intron length? For predicting genes from a sequenced genome, you need to set a maximum intron length. How long can introns get in animals? Is there some limit?
. < shows that most introns are less than about 10 kb (and personal experience in Drosophila confirms that - I've _rarely_ seen an intron bigger than about since it's nearly impossible to detect the splicing reaction, particularly if they're very large, it's not clear whether they are spliced as one BIG intron
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Intron-mediated enhancement
Intron-mediated enhancement (IME) is the ability of an intron sequence to enhance the expression of a gene containing that intron. If the intron can no longer enhance expression, then inclusion of the intron in the transcript is important, and the intron probably causes IME. wikipedia.org
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How to replace intron region in a plasmid? I'm considering working with the plasmid pRFHUE-eGFP and would like to replace the gpdA intron (which is the eGFP promoter region) with a promoter from another organism. Wha...
Your strategy would work, but if possible you might be better off using XmaI rather than SmaI, as the latter is a blunt-end cutting enzyme. Furthermore, your strategy would not replace the entire _gpdA_ promoter, if that's what you're after. You might wanna refer to their paper, where it's clear fro...
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Intron Depot 1
One feature of Intron Depot 1 is that all of the works are presented with a small aside from Shirow as to his thoughts on them. Intron Depot 1 in two spots in particular is quite graphic. wikipedia.org
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Group I catalytic intron
Both intron-early and intron-late theories have found evidences in explaining the origin of group I introns. See also Intron Group I Intron Sequence and Structure Database Splice site Nuclear introns Group II intron Group III intron Twintron LtrA Cyclic di-GMP-II wikipedia.org
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DNA MOLECULES COMPRISING A MODIFIED Group II INTRON
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Correlation analysis of DRB 1 gene intron 2 microsatellite polymorphism ...
Abstract: The correlation of the Gansu Alpine Merino DRB1 gene intron 2 microsatellite polymorphism and growth performance were analyzed by growth performance measurement, DNA sequencing and microsatellite DNA polymorphism detection.The results showed that the Gansu Alpine Merino DRB1 gene intron 2 microsatellite repeat unit was composed of GT and GA, which belonged to compound microsatellite ... www.zjnyxb.cn
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Exon-intron database
The Exon-Intron Database (EID) is a database of spliced mRNA sequences. See also Alternative splicing Exon Intron References External links Homepage Biological databases Gene expression Spliceosome RNA splicing wikipedia.org
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Location of TFBS in genome I have an annotated set of SNPs and I would like to explore the difference in the binding affinity of the transcription factor (TF) if I have a SNP in my locus. As my SNPs are annotated (I k...
I would link your data with the ENCODE dataset. This dataset provides locations of TFBS. It is also accessible via the UCSC genome browser. For the actual question TFBS are located pretty much everywhere, including exons (as described here), introns and of course intergenic regions (e.g. enhancers, ...
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