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Deciphering the exact breakpoints of structural variations using long ...
We present DeBreak, a computational method for comprehensive and accurate SV discovery. Based on alignment results, DeBreak employs a density-based approach.
www.nature.com
www.nature.com
Maggi-Chen/DeBreak: Structural variant caller for real-time ... - GitHub
DeBreak is a tool for SV discovery with long read data. The input should be a sorted BAM (PacBio CLR, PacBio HiFi, Oxford Nanopore, or mixed platform).
github.com
github.com
Deciphering the exact breakpoints of structural variations using long ...
We present DeBreak, a computational method for comprehensive and accurate SV discovery. Based on alignment results, DeBreak employs a density-based approach.
pubmed.ncbi.nlm.nih.gov
pubmed.ncbi.nlm.nih.gov
debreak
† deˈbreak, v. Obs. rare. [f. de- I. 1 + break v.] trans. To break down (transl. L. decerpere).1382 Wyclif Mark i. 26 The onclene goost debrekynge [v.r. to-braydynge, 1388 debreidynge, to-breidinge] hym, and cryinge with grete vois.
Oxford English Dictionary
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DeBreak: Deciphering the exact breakpoints of structural variations ...
DeBreak outperforms existing tools on both simulated and real long-read sequencing data from both PacBio and Nanopore platforms. An important application of ...
www.researchgate.net
www.researchgate.net
debreak, v. meanings, etymology and more - Oxford English Dictionary
There is one meaning in OED's entry for the verb debreak. See 'Meaning & use' for definition, usage, and quotation evidence. This word is now obsolete.
www.oed.com
www.oed.com
debraid
† deˈbraid, v. Obs. rare. In 4–5 debreyd. [f. de- I. 1 + braid v.1 3 to snatch.] To snatch down (rendering L. decerpere).1388 [see debreak].
Oxford English Dictionary
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Deciphering the exact breakpoints of structural variations using long ...
“To address this, we developed DeBreak, which improves both sensitivity and precision, offering a more comprehensive understanding of the role ...
www.uab.edu
www.uab.edu
Workflow of DeBreak The major steps of DeBreak SV discovery ...
To address these limitations, we present DeBreak, a computational method for comprehensive and accurate SV discovery. Based on alignment results, DeBreak ...
www.researchgate.net
www.researchgate.net
Deciphering the exact breakpoints of structural variations using long ...
An important application of DeBreak is analyzing cancer genomes for potentially tumor-driving SVs. DeBreak can also be used for supplementing whole-genome ...
ideas.repec.org
ideas.repec.org
A survey of algorithms for the detection of genomic structural ...
Similarly, DeBreak carries out local de-novo assembly only for regions with large numbers of clippings to identify large insertions. Unfortunately, local ...
pmc.ncbi.nlm.nih.gov
pmc.ncbi.nlm.nih.gov
Tradeoffs in alignment and assembly-based methods for structural ...
DeBreak, can also be classified as a hybrid method that employs a read alignment-based strategy in combination with a local assembly ...
www.nature.com
www.nature.com
de-
de-, prefix The Latin adverb and preposition, used in combination with verbs, and their derivatives. A large number of verbs so formed lived on in French as popular words, or were taken over into the language in earlier or later times as learned words, and thence came into English, as dēcrēsc-ĕre, d...
Oxford English Dictionary
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