We assume the order of cookies in the package doesn't matter.
There are $\binom{6}{3}$ three-flavour packages. To count the two-flavour packages, the majority cookie can be chosen in $6$ ways, and for each of these ways the minority cookie can be chosen in $5$ ways. Finally, there are $6$ one-flavour packages, for a total of $56$.
_Remark:_ Dividing $216$ by $3!$ is not right. The division by $3!$ is correct for three-flavour packages, but two-flavour ordered packages only come in $3$ orders, not $3!$, and one-flavour packages come in only one order.