As nomen pointed out, you need Bayes' Theorem here but you will find it helpful the expand the denominator as follows
$P(A|B) = \frac{P(B|A)P(A)}{P(B|A)P(A) + P(B|\bar{A})P(\bar{A})}$
where the bars indicate complements. In particular, let A be having the disease and B be testing positive. Then
$P(B|A) = \frac{99}{100}$
$P(A) = \frac{1}{1000}$
$P(B|\bar{A}) = \frac{2}{100}$
$P(\bar{A}) = 1 - P(A)$
Plug and chug from here.