I would hesitate to say that "bees are disappearing". But yes, there is a problem.
It's called Colony Collapse Disorder and there is nothing certain about why it happens. It's probably a combination of factors. The Wikipedia article is good. I've recently read some articles claiming that they have found a definitive link to some disease, but I can't find it right now, so I don't know if there is any good basis for the claim.
Update: The claims blaming the pesticide Imidacloprid seems promising and seem to be the strongest claims of a cause at the moment.