In this case, "habits" is probably using the definition of "a settled tendency or usual manner of behavior". Once this trance that led to him creating the Creature had passed, he returned to his normal way of life, and he was acutely aware of what it was that he had been doing, now making his limbs tremble and eyes swim as he thinks back on it.
If you wanted a slightly more colloquial interpretation:
".... I had returned to my **usual routine**."