I'm going to go out on a limb and say that your convention of alternating parenthesis is not a convention at all and that for consistency one should always use parenthesis. e.g $((x - 3(z +y))^2 + (57 - q(a+b)))^3$ is the "correct" way to do it. However _clarity_ is often more important than "correctness". e.g $(\\{x - 3(z + y)\\}^2 + \\{57 - q(a+b)\\})^3$ is easier to read and $[\\{x - 3(z + y)\\}^2 + \\{57 - q(a+b)\\}]^3$ is even more so.
At any rate I'm confident in saying there is no convention.
Heck, if you are able to, use colors. That's even clearer.