This is true for all upper half-spaces $H = \Bbb H^k$. By invariance of domain, $\partial M$ is a homeomorphism invariant of $M$. So if $H-A$ and $H-B$ were homeomorphic, then $\partial H - A$ would be homeomorphic to $\partial H - B$. Suppose $|A| = n, |B| = m$. Then $\partial H - A$ is homotopy equivalent to a wedge of $n$ copies of the $(k-1)$-sphere, and $\partial H - B$ is homotopy equivalent to a wedge of $m$ copies of the $(k-1)$-sphere. So you can tell their homotopy types apart by looking at their homology, which is distinct.