The probability that one iteration leaves both urns empty is
$$ \frac{\binom{n-2}2}{\binom n2}=\frac{(n-2)(n-3)}{n(n-1)}\;, $$
so the probability of both urns being empty is
$$ \left(\frac{(n-2)(n-3)}{n(n-1)}\right)^k\;. $$
The probability of a particular one of the two urns being empty is
$$ \left(\frac{n-2}n\right)^k\;. $$
Thus the probability of neither urn being empty is
$$ 1-2\,\left(\frac{n-2}n\right)^k+\left(\frac{(n-2)(n-3)}{n(n-1)}\right)^k\;. $$