Let $L$ be our atomic Boolean lattice, and suppose $x, y \in L$ with $x < y$. We have to show that there exist $a,b \in L$ such that $x \leq a \prec b \leq y$.
Let $x'$ denote the complement of $x$, and consider the homomorphism \begin{align*} \downarrow x' &\longrightarrow \uparrow x, \\\ c &\longmapsto c \vee x \end{align*} which is easily seen to be an isomorphism of lattices with inverse $d \mapsto d \wedge x'$. Now $\downarrow x'$ inherits atomicity from $L$, so $\uparrow x$ is atomic as well. Since $x < y$, there exists an $a \in \uparrow x$ such that $x \prec a \leq y$.