I just tested this at my shell prompt and got similar results. However, closer examination shows an error.
`ctrl`+`/` (which you might think is ctrl-?) actually produces ctrl-_ which is typically bound to "undo". If you want ctrl-? you need to press `ctrl`+`shift`+`?`. You can test this by typing `ctrl`+`v` `ctrl`+`/`
Note that the stty command affects terminal editing in "cooked" mode where the undo key doesn't work. So my guess is that you are using a shell like bash that implements its own command line editing, which might honor the stty settings but doesn't have to and adds a lot of fancier editing keys as well.