A multi-permutation is non-nesting if and only if the first occurrences of each symbol come in the same order as the second occurrences. So the multi-permutation is uniquely determined by two pieces of information:
1. the order of the first occurrences
2. the pattern of firsts and seconds
A pattern is of the form FSFFFSSS, and the only restriction on possible patterns is that every initial segment contains at least as many F as S. So these are just the Dyck paths of length $2k$.