I think the standard version is "Who travels a hundred _li_) calls ninety a half", because this is the original form attested in a Chinese chronicle.
There is another quote from a Japanese writer Ryūnosuke Akutagawa, which says "assumes the half of a hundred _li_ to be ninety-nine _li_ ".
Either way, I could not find an exact Japanese source that tells the number "95%". And I doubt that it exists.