was originally . is an uncommon kanji meaning "gut." According to this article, was much more commonly used by novelists in the Meiji and Taisho periods. According to this chiebukuro question, the first edition of , one of the most authoritative Japanese dictionaries, had only as the kanji for .
For some reason came into use and somehow overtook during the Showa period. Many sites believe this was basically a misuse. Every so often controversial usages of words may become acceptable gradually over time...
BTW there are similar word pairs where doesn't appear to change the meaning, for example /, /, /. See the following article for details. I initially thought was also an example of this, but the case of seems to be another story.
* Q&A