One example that springs to mind: A (simple) graph is a forest iff it has no $K_3$ as a minor, and also iff it has no $K_3$ as a topological minor (homeomorphic subgraph).
More generally, if the forbidden graphs have maximum degree 3, there's no difference between minors and topological minors (see Proposition 1.7.4 in Diestel's textbook).