Up to homeomorphism the basic ones are homeomorphic copies of the ordinal space $\alpha+1$ for each $\alpha<\omega_1$, and Cantor sets. Of course $X$ is also closed under finite unions.
Of course a space homeomorphic to one of the countable compact ordinal space can be embedded in a non-obvious way. For example, $\omega^2+1$ can be embedded as follows:
$$f:\omega^2+1\to\Bbb R:\begin{cases} \omega\cdot n\mapsto\frac1{2^n}\\\\\\\ \omega\cdot n+k\mapsto\frac1{2^{n+1}}-\frac1{2^{n+2+k}},&\text{if }k>0\\\\\\\ \omega^2\mapsto 0\;. \end{cases}$$
The resulting set of reals looks schematically like this in its order in $\Bbb R$:
$$\bullet\dots\longrightarrow\bullet\longrightarrow\bullet\longrightarrow\bullet\longrightarrow\bullet\longrightarrow\bullet\bullet$$
The bullets ($\bullet$) from right to left are $f(\omega\cdot0),f(\omega\cdot 1),f(\omega\cdot2),\ldots,f(\omega^2)$. This is rather different from our usual picture of $\omega^2+1$ in its natural (ordinal) order.